mega x Search Results


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mega x  (Hasegawa Co Ltd)
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mega x software  (Biodesign International Inc)
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Mega X Software, supplied by Biodesign International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mega x  (Biodesign International Inc)
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Mega X, supplied by Biodesign International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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geneious v10.1.3  (Biotechnology Information)
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Biotechnology Information geneious v10.1.3
Illustration of the different proteotyping steps. 1) Recording of the ICMS mass spectra of the C. fetus test cohort and reference strain Cff LMG 6442 (NCTC 10842). 2) Establishment of a C. fetus-specific allelic isoform list by blasting the genome sequences obtained from the <t>NCBI</t> database against the genome of the C. fetus reference strain. Subsequently, allelic isoforms in the test cohort are identified by comparing with the newly established allelic isoform list. 3) For each strain in the test cohort, a specific set of biomarker isoforms is obtained. Subsequently the amino acid sequences of the biomarkers are fused into a single sequence that results in specific proteotyping-based sequence type for each of the strains and allows the calculation of an proteotyping-derived taxonomic dendrogram
Geneious V10.1.3, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mega x  (Tajima Shoji Co Ltd)
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Illustration of the different proteotyping steps. 1) Recording of the ICMS mass spectra of the C. fetus test cohort and reference strain Cff LMG 6442 (NCTC 10842). 2) Establishment of a C. fetus-specific allelic isoform list by blasting the genome sequences obtained from the <t>NCBI</t> database against the genome of the C. fetus reference strain. Subsequently, allelic isoforms in the test cohort are identified by comparing with the newly established allelic isoform list. 3) For each strain in the test cohort, a specific set of biomarker isoforms is obtained. Subsequently the amino acid sequences of the biomarkers are fused into a single sequence that results in specific proteotyping-based sequence type for each of the strains and allows the calculation of an proteotyping-derived taxonomic dendrogram
Mega X, supplied by Tajima Shoji Co Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mega5.0 software  (SourceForge net)
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Illustration of the different proteotyping steps. 1) Recording of the ICMS mass spectra of the C. fetus test cohort and reference strain Cff LMG 6442 (NCTC 10842). 2) Establishment of a C. fetus-specific allelic isoform list by blasting the genome sequences obtained from the <t>NCBI</t> database against the genome of the C. fetus reference strain. Subsequently, allelic isoforms in the test cohort are identified by comparing with the newly established allelic isoform list. 3) For each strain in the test cohort, a specific set of biomarker isoforms is obtained. Subsequently the amino acid sequences of the biomarkers are fused into a single sequence that results in specific proteotyping-based sequence type for each of the strains and allows the calculation of an proteotyping-derived taxonomic dendrogram
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mega x 10.1  (Biotechnology Information)
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Biotechnology Information mega x 10.1
Illustration of the different proteotyping steps. 1) Recording of the ICMS mass spectra of the C. fetus test cohort and reference strain Cff LMG 6442 (NCTC 10842). 2) Establishment of a C. fetus-specific allelic isoform list by blasting the genome sequences obtained from the <t>NCBI</t> database against the genome of the C. fetus reference strain. Subsequently, allelic isoforms in the test cohort are identified by comparing with the newly established allelic isoform list. 3) For each strain in the test cohort, a specific set of biomarker isoforms is obtained. Subsequently the amino acid sequences of the biomarkers are fused into a single sequence that results in specific proteotyping-based sequence type for each of the strains and allows the calculation of an proteotyping-derived taxonomic dendrogram
Mega X 10.1, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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tajima's neutrality test mega x  (Tajima Shoji Co Ltd)
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Tajima Shoji Co Ltd tajima's neutrality test mega x
( a ) SLAC-inferred dN/dS ratios, scaled by length of tested branches for MHC Class I A1. ( b ) MHC Class II B1. Synonymous substitutions are bars above 0 (zero indicates no selection or <t>neutrality)</t> and non-synonymous substitutions are indicated by bars below 0.
Tajima's Neutrality Test Mega X, supplied by Tajima Shoji Co Ltd, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Illustration of the different proteotyping steps. 1) Recording of the ICMS mass spectra of the C. fetus test cohort and reference strain Cff LMG 6442 (NCTC 10842). 2) Establishment of a C. fetus-specific allelic isoform list by blasting the genome sequences obtained from the NCBI database against the genome of the C. fetus reference strain. Subsequently, allelic isoforms in the test cohort are identified by comparing with the newly established allelic isoform list. 3) For each strain in the test cohort, a specific set of biomarker isoforms is obtained. Subsequently the amino acid sequences of the biomarkers are fused into a single sequence that results in specific proteotyping-based sequence type for each of the strains and allows the calculation of an proteotyping-derived taxonomic dendrogram

Journal: European Journal of Microbiology & Immunology

Article Title: Differentiation of Campylobacter fetus Subspecies by Proteotyping

doi: 10.1556/1886.2019.00006

Figure Lengend Snippet: Illustration of the different proteotyping steps. 1) Recording of the ICMS mass spectra of the C. fetus test cohort and reference strain Cff LMG 6442 (NCTC 10842). 2) Establishment of a C. fetus-specific allelic isoform list by blasting the genome sequences obtained from the NCBI database against the genome of the C. fetus reference strain. Subsequently, allelic isoforms in the test cohort are identified by comparing with the newly established allelic isoform list. 3) For each strain in the test cohort, a specific set of biomarker isoforms is obtained. Subsequently the amino acid sequences of the biomarkers are fused into a single sequence that results in specific proteotyping-based sequence type for each of the strains and allows the calculation of an proteotyping-derived taxonomic dendrogram

Article Snippet: To analyze the biomarkers' protein sequences translated from the National Center for Biotechnology Information (NCBI) nucleotide database (Geneious V10.1.3) they were concatenated for each strain and an unweighted pair group method with arithmetic mean (UPGMA) dendrogram (MEGA X) was constructed [ ].

Techniques: Biomarker Discovery, Sequencing, Derivative Assay

( a ) SLAC-inferred dN/dS ratios, scaled by length of tested branches for MHC Class I A1. ( b ) MHC Class II B1. Synonymous substitutions are bars above 0 (zero indicates no selection or neutrality) and non-synonymous substitutions are indicated by bars below 0.

Journal: Animals : an Open Access Journal from MDPI

Article Title: Evaluating the Potential Fitness Effects of Chinook Salmon ( Oncorhynchus tshawytscha ) Aquaculture Using Non-Invasive Population Genomic Analyses of MHC Nucleotide Substitution Spectra

doi: 10.3390/ani13040593

Figure Lengend Snippet: ( a ) SLAC-inferred dN/dS ratios, scaled by length of tested branches for MHC Class I A1. ( b ) MHC Class II B1. Synonymous substitutions are bars above 0 (zero indicates no selection or neutrality) and non-synonymous substitutions are indicated by bars below 0.

Article Snippet: The results from the Tajima’s neutrality test (MEGA X) showed a total number of 38 segregating sites for the hatchery population at the MHC Class I locus, where total nucleotide diversity was 0.037, with a Tajima test statistic of 0.145 [ ].

Techniques: Selection